Fix memory allocations

data/run_helper.txt

@@ -1,9 +1,9 @@
 Dataset X {
 	int NUMBER_OF_POINTS = 600;
 	int DIMENSIONS = 2;
-	char* POINTS_FILENAME = "data/X.bin";
+	char* POINTS_FILENAME = "../data/X.bin";
 	
-	A good h is 1
+	A good deviation is 1
 	For Processing script:
 		float maxX = 17.124000;
 		float minX = 3.402000;
@@ -16,9 +16,9 @@ Dataset X {
 Dataset s1 {
 	int NUMBER_OF_POINTS = 5000;
 	int DIMENSIONS = 2;
-	char* POINTS_FILENAME = "data/s1";
+	char* POINTS_FILENAME = "../data/s1";
 	
-	A good h is 30000
+	A good deviation is 30000
 	For Processing script:
 		float maxX = 961951;
 		float minX = 19835;
@@ -31,9 +31,9 @@ Dataset s1 {
 Dataset s4 {
 	int NUMBER_OF_POINTS = 5000;
 	int DIMENSIONS = 2;
-	char* POINTS_FILENAME = "data/s4";
+	char* POINTS_FILENAME = "../data/s4";
 	
-	A good h is 30000-35000
+	A good deviation is 30000-35000
 	For Processing script:
 		float maxX = 932954;
 		float minX = 89604;

mean_shift_serial/serial_declarations.c

@@ -90,27 +90,26 @@ void init(double ***vectors, char **labels, parameters *params){
 int meanshift(double **original_points, double ***shifted_points, int deviation
     , parameters *opt){
     static int iteration = 0;
+    static double **mean_shift_vector, **kernel_matrix, *denominator;
 
     // allocates memory and copies original points on first iteration
     if (iteration == 0 || (*shifted_points) == NULL){
-        iteration = 0;
         (*shifted_points) = alloc_2d_double(NUMBER_OF_POINTS, DIMENSIONS);
         duplicate(original_points, NUMBER_OF_POINTS, DIMENSIONS, shifted_points);
-    }
 
-    // allocates memory for mean shift vector
-    double **mean_shift_vector;
-    mean_shift_vector = alloc_2d_double(NUMBER_OF_POINTS, DIMENSIONS);
-    // initializes elements of mean_shift_vector to inf
-    for (int i=0;i<NUMBER_OF_POINTS;i++){
-        for (int j=0;j<DIMENSIONS;j++){
-            mean_shift_vector[i][j] = DBL_MAX;
+        // allocates memory for mean shift vector
+        mean_shift_vector = alloc_2d_double(NUMBER_OF_POINTS, DIMENSIONS);
+        // initializes elements of mean_shift_vector to inf
+        for (int i=0;i<NUMBER_OF_POINTS;i++){
+            for (int j=0;j<DIMENSIONS;j++){
+                mean_shift_vector[i][j] = DBL_MAX;
+            }
         }
-    }
 
-    // allocates memory for other arrays needed
-    double **kernel_matrix = alloc_2d_double(NUMBER_OF_POINTS, NUMBER_OF_POINTS);
-    double *denominator = malloc(NUMBER_OF_POINTS * sizeof(double));
+        // allocates memory for other arrays needed
+        kernel_matrix = alloc_2d_double(NUMBER_OF_POINTS, NUMBER_OF_POINTS);
+        denominator = malloc(NUMBER_OF_POINTS * sizeof(double));
+    }
 
     // finds pairwise distance matrix (inside radius)
     // [I, D] = rangesearch(x,y,h);
@@ -160,17 +159,19 @@ int meanshift(double **original_points, double ***shifted_points, int deviation
     double current_norm = norm(mean_shift_vector, NUMBER_OF_POINTS, DIMENSIONS);
     printf("Iteration n. %d, error %f \n", iteration, current_norm);
 
-    // cleans up this iteration's allocations
-    free(mean_shift_vector[0]);
-    free(mean_shift_vector);
-    free(kernel_matrix[0]);
-    free(kernel_matrix);
-    free(denominator);
-
     /** iterates until convergence **/
     if (current_norm > opt->epsilon) {
         ++iteration;
-        return meanshift(original_points, shifted_points, deviation, opt);
+        meanshift(original_points, shifted_points, deviation, opt);
+    }
+
+    if (iteration == 0){
+        // cleans up this iteration's allocations
+        free(mean_shift_vector[0]);
+        free(mean_shift_vector);
+        free(kernel_matrix[0]);
+        free(kernel_matrix);
+        free(denominator);
     }
 
     return iteration;